PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000270.1_g00054.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 673aa    MW: 75371.2 Da    PI: 6.6892
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000270.1_g00054.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000137798223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             kC +C + F ++ n++rH+r+H
  Itr_sc000270.1_g00054.1 77 KCVKCFREFCSPVNYRRHMRLH 98
                             7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.5387698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MSVAKFGTLG TPDATRSDEG NNSLDTFIRQ AIGKEPLLSF SRTGDSPVQL IQLLHALDQP  60
DLPGWPLLTP LKVQMQKCVK CFREFCSPVN YRRHMRLHRR SLNFDKESRK YRGLLGAFWD  120
KLTLEEVKKV ASLNDVSLKE IPGTSLVNGL SMSICKAMVW TLPSVYVKAG SALLEIIQAK  180
PCRLPLSSLE LFSILDDASE RTFLCAGTAE AVQKYVFDGE VAKVGLDLKN LIACTCFLFE  240
QKLVKAWLVD KDAEALRCQK LLVEEEEAAQ RRYDFIGHMK AELLEIKRQK KLRQKEQKAR  300
DQTNEEKVDI FVMADSLDDP LMAGVSSPPA SSDSNSSSNL DVSVDDSCLE MVHLNKDQDV  360
EAQKLFNENF EMAVQNVEPQ LVLAKSQEQL ANSQWQVQKP QRPGRNGFYG SQNHQDLKVE  420
PVQKHGPPSV RGPVIDGKIW TRKVRPENNE SLRQVSQKTA ISENHSDCEV MIGLISVPVK  480
NCTQHQHGNN LEEAQDDSGN KQDSEPKKHN IPENQNKNVH SKYTTNRPAN KHWRPVSRHD  540
GGRQDQEDGV LVKVDDQTLS SEKFQQSHSM VNGNNKNHSC LPPEGNTHSE GLPLCSSVAK  600
AFLAQRWKEA ISADHVKLVL SPAPEAQCDT LEATSPSVNQ EAFCGLDLQS SSLNRFEQQR  660
FRFISDLLSG NEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589941.10.0PREDICTED: uncharacterized protein LOC104087232
RefseqXP_009589942.10.0PREDICTED: uncharacterized protein LOC104087232
RefseqXP_009589943.10.0PREDICTED: uncharacterized protein LOC104087232
RefseqXP_009589944.10.0PREDICTED: uncharacterized protein LOC104087232
TrEMBLM1BAI60.0M1BAI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000408430.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-115C2H2-like zinc finger protein